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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145619467_145619877_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
145619467 - 145619877
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTTTTTCCATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
86.8
0.83
0.7
84.8
29.8
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
46
-0.4
1.9
54.05
42.3

Associated Gene:

Gene:
TXNDC9
Ensembl Gene ID:
ENSAPLG00000015346
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015993
145619292 - 145628331
9040