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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145623581_145625934_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145623581 - 145625934
Intron Length:
2354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTCGACA
Flanking Amino Acid:
VCHFYRDTTFRCQIMDKHLT
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.9
84.3
30.8
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
65.1
0.47
1.5
77.83
32.5

Associated Gene:

Gene:
TXNDC9
Ensembl Gene ID:
ENSAPLG00000015346
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028588
145619292 - 145628331
9040
ENSAPLT00000015993
145619292 - 145628331
9040