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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145638025_145638630_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145638025 - 145638630
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TCTCATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTTTCCAAACA
Flanking Amino Acid:
LLLLGLSALIAPSASYSCYG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
46.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.6
0.78
0.8
76.4
37.3
Minor 5ss
36.5
-1.5
3.2
48.4
47.2
Minor BPS
54.8
0.15
2
72.44
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030229
145637835 - 145640644
2810