Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14564092_14564840_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14564092 - 14564840

Intron Length:

749

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTCAGTATT

5'SS Class:

major

3'SS Sequence:

CTCTCTGTGAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAGTGAT

U12 Branch Point Sequence:

TGTGCAGTGATT

Flanking Amino Acid:

LHEKIGDGDNQFPIDRAVML

Intron Amino Acid Position:

393

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.6

0.37

1.3

75.9

39.9

Major BPS

61.1

0.28

1.2

52.7

43.2

Major PPT

59.7

0.22

1.2

37.9

Minor 5ss

39.3

-1.2

2.9

Minor BPS

45.4

-0.2

2.3

68.65

42.6

Associated Gene:

Gene:

LRRK2

Ensembl Gene ID:

ENSAPLG00000012447

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042677

14516850 - 14584668

67819

ENSAPLT00000013078

14514400 - 14584668

70269