About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145649673_145649846_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145649673 - 145649846
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCATCTTTACTT
Flanking Amino Acid:
TAKPEGLTYCGVPASKKIAE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
85.6
31.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.3
0.62
0.9
69.8
40.4
Minor 5ss
40.8
-1
2.8
55.7
41.6
Minor BPS
57.9
0.33
1.6
68.89
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015813
145649259 - 145652135
2877