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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145664234_145664312_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145664234 - 145664312
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
AAAACTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GGTTACTAAATT
Flanking Amino Acid:
EDPYIRHVHQLYNFLRFCEM
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
69.9
0.45
1
61.7
43.4
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
57
0.3
1.9
74.65
42

Associated Gene:

Gene:
MITD1
Ensembl Gene ID:
ENSAPLG00000014881
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015514
145663578 - 145665759
2182