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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145664400_145665073_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145664400 - 145665073
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATATTTTTACTT
Flanking Amino Acid:
TIHLLTSYDEGSGRNQQTSG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.8
0.65
0.9
78.5
34.4
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
59.8
0.39
1.5
74.15
37.4

Associated Gene:

Gene:
MITD1
Ensembl Gene ID:
ENSAPLG00000014881
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015514
145663578 - 145665759
2182