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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145665577_145665663_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145665577 - 145665663
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
ATTCTGTCAATT
Flanking Amino Acid:
RGLDYFKKPEGRFSIGYCDF
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
77.7
0.62
0.9
73.2
36.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
48.1
-0
2.2
71.65
39.6

Associated Gene:

Gene:
MITD1
Ensembl Gene ID:
ENSAPLG00000014881
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015514
145663578 - 145665759
2182