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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145681716_145681870_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145681716 - 145681870
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGATTT
5'SS Class:
major
3'SS Sequence:
TTATTTGACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTATTTGACA
Flanking Amino Acid:
ERDSLREQLKISQETAFSEK
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
75.4
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.5
0.53
1
69.1
40.9
Minor 5ss
46.3
-0.4
2.8
65.6
45.6
Minor BPS
67.2
0.54
1.5
76.17
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034560
145680047 - 145686014
5968