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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145681949_145684414_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145681949 - 145684414
Intron Length:
2466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
ATTATATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATGCTTAATT
Flanking Amino Acid:
IEELETTIQNLDSERLEQMS
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
74.4
35.6
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
0.9
67.3
43.3
Minor 5ss
35
-1.7
3.2
45.6
42.5
Minor BPS
68
0.64
1.8
80.42
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034560
145680047 - 145686014
5968