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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145684567_145685872_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145684567 - 145685872
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATATCTGAATT
Flanking Amino Acid:
SHQKAEYASLSLLNEETEQS
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.6
0.78
0.8
76.4
37.6
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
60.1
0.4
1.4
73.25
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034560
145680047 - 145686014
5968