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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145697314_145699637_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145697314 - 145699637
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGAAAGG
5'SS Class:
major
3'SS Sequence:
AATCTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TACGCCTAAAAC
Flanking Amino Acid:
NQQLTSTAEKLQSECESSYS
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
60.7
43.4
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
71.7
0.49
1
70.2
40.4
Minor 5ss
20.5
-3.4
3.8
30.8
42.8
Minor BPS
49.8
-0
1.9
60.45
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015428
145695254 - 145702286
7033