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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145724336_145734608_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
145724336 - 145734608
Intron Length:
10273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTATCTCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATTGATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.4
0.59
0.8
74.3
30.6
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
61.2
0.35
1.6
69.61
36.6

Associated Gene:

Gene:
KIAA1211L
Ensembl Gene ID:
ENSAPLG00000014720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015338
145723901 - 145756998
33098