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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145742882_145745001_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145742882 - 145745001
Intron Length:
2120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCTTTCTGAATC
Flanking Amino Acid:
RSSRMRRFSQRTQSESLTDL
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
63.1
0.39
1.4
67.42
38.4

Associated Gene:

Gene:
KIAA1211L
Ensembl Gene ID:
ENSAPLG00000014720
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045517
145734609 - 145756998
22390
ENSAPLT00000015338
145723901 - 145756998
33098