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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145773676_145796690_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145773676 - 145796690
Intron Length:
23015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
CCCGAAATAACC
Flanking Amino Acid:
SWYTAWQNGKEKLIAYQREF
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
61.3
0.28
1
62
30.6
Major PPT
89.1
0.88
0.6
85.8
21.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
40.2
-0.7
2
44.88
43.1

Associated Gene:

Gene:
MGAT4A
Ensembl Gene ID:
ENSAPLG00000014270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021703
145773582 - 145838939
65358
ENSAPLT00000014941
145773582 - 145838812
65231