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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145812577_145813103_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145812577 - 145813103
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTGTATGATT
Flanking Amino Acid:
VNNVVASLEKEFSTEINSGL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.9
79.9
32.1
Minor 5ss
43.2
-0.7
2.8
54.8
43.5
Minor BPS
48.4
-0
2
71.12
40.8

Associated Gene:

Gene:
MGAT4A
Ensembl Gene ID:
ENSAPLG00000014270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021703
145773582 - 145838939
65358
ENSAPLT00000014941
145773582 - 145838812
65231