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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145813887_145815324_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145813887 - 145815324
Intron Length:
1438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TACCTTCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATAG
Flanking Amino Acid:
AQKKGVYYIQLEDDIVVKQN
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.4
0.55
0.8
66.4
35.4
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
52.1
-0
1.9
65.55
42.1

Associated Gene:

Gene:
MGAT4A
Ensembl Gene ID:
ENSAPLG00000014270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021703
145773582 - 145838939
65358
ENSAPLT00000014941
145773582 - 145838812
65231