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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145815450_145830589_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
145815450 - 145830589
Intron Length:
15140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTCATTTC
5'SS Class:
weak_major
3'SS Sequence:
AGATATATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTA
Flanking Amino Acid:
FSQLGFIGKKIFTYSSVEYM
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.3
60.8
38.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.7
0.4
1.1
59.6
44.9
Minor 5ss
41.8
-0.9
3.1
57.8
40.3
Minor BPS
61.7
0.36
1.7
75.93
35.7

Associated Gene:

Gene:
MGAT4A
Ensembl Gene ID:
ENSAPLG00000014270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014941
145773582 - 145838812
65231