About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145835649_145837825_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145835649 - 145837825
Intron Length:
2177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTCAAAATAAAT
Flanking Amino Acid:
NTTVEVLPFQNEELVLSKET
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.3
0.7
0.9
76.5
37.7
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
41.4
-0.5
2
58.72
43

Associated Gene:

Gene:
MGAT4A
Ensembl Gene ID:
ENSAPLG00000014270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021703
145773582 - 145838939
65358
ENSAPLT00000014941
145773582 - 145838812
65231