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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145838768_145838912_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145838768 - 145838912
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TAAAATATAACT
Flanking Amino Acid:
NSAVWAILNEIHIKKITN*
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
49.3
0.03
1.8
69.36
40.6

Associated Gene:

Gene:
MGAT4A
Ensembl Gene ID:
ENSAPLG00000014270
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021703
145773582 - 145838939
65358