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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145844924_145845455_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145844924 - 145845455
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CACTACTTCACA
Flanking Amino Acid:
YIYVTFLGYSALPFLKNTAI
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
67.8
0.44
1
75
30.1
Major PPT
89.4
0.89
0.7
84.5
30.4
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
50.1
-0
2
61.16
44.7

Associated Gene:

Gene:
UNC50
Ensembl Gene ID:
ENSAPLG00000026135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024666
145842637 - 145849228
6592