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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145845558_145845634_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145845558 - 145845634
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCGCAA
U12 Branch Point Sequence:
TGGACCGCAACA
Flanking Amino Acid:
LHFIQLFFINYVIISDSVIG
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
45.8
-0.2
1.3
51.3
35.5
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
47
-0.2
2.2
61.35
44.3

Associated Gene:

Gene:
UNC50
Ensembl Gene ID:
ENSAPLG00000026135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024666
145842637 - 145849228
6592