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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145845775_145847913_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145845775 - 145847913
Intron Length:
2139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTGCGTTAACT
Flanking Amino Acid:
GVGLLIATLMWFISNKYLVK
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.7
0.6
0.8
73.2
31.7
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
63.9
0.52
2.2
83.33
44.1

Associated Gene:

Gene:
UNC50
Ensembl Gene ID:
ENSAPLG00000026135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024666
145842637 - 145849228
6592