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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145848035_145848918_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145848035 - 145848918
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTAACTTCAATA
Flanking Amino Acid:
FLVLLSVWLCVSTVGFGFVL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
86.6
0.82
0.7
85.7
27.6
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
60
0.31
1.5
69.33
37

Associated Gene:

Gene:
UNC50
Ensembl Gene ID:
ENSAPLG00000026135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024666
145842637 - 145849228
6592