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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145920358_145921764_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
145920358 - 145921764
Intron Length:
1407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TACATGGCTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AAAATCTAAATT
Flanking Amino Acid:
PDEPILEFSLACSELLTPSL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
54.4
0.1
1.2
52.6
41.5
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
50.8
0.1
1.7
64.84
39.6

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006841
145852047 - 145966818
114772
ENSAPLT00000022176
145916757 - 145966818
50062
ENSAPLT00000006845
145852047 - 145966818
114772