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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145922917_145925411_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145922917 - 145925411
Intron Length:
2495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAGT
5'SS Class:
major
3'SS Sequence:
GTGTTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ACCTCCAAAAAA
Flanking Amino Acid:
EKNHRLHLTLRSAESDRVGN
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.7
0.65
1
72.9
42.2
Minor 5ss
39.9
-1.1
2.5
52.3
44.2
Minor BPS
46
-0.3
2
55.7
43.1

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006841
145852047 - 145966818
114772
ENSAPLT00000022176
145916757 - 145966818
50062
ENSAPLT00000006845
145852047 - 145966818
114772