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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145925524_145926570_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145925524 - 145926570
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTG
Flanking Amino Acid:
TRSPDTINGRTVLPVDESLT
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.3
32.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.7
0.85
0.8
88.9
28.2
Minor 5ss
34.4
-1.8
2.8
37.5
40.1
Minor BPS
69.3
0.47
1.6
74.81
38.1

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006845
145852047 - 145966818
114772
ENSAPLT00000006841
145852047 - 145966818
114772
ENSAPLT00000022176
145916757 - 145966818
50062