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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145939111_145941536_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145939111 - 145941536
Intron Length:
2426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
LQVDWHEEEWEKVWLNVDKS
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.4
41.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.2
0.66
1
83.4
32
Minor 5ss
49.5
-0
2.4
58.1
46.5
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022176
145916757 - 145966818
50062
ENSAPLT00000006845
145852047 - 145966818
114772
ENSAPLT00000006841
145852047 - 145966818
114772