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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145941835_145949141_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145941835 - 145949141
Intron Length:
7307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTTCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTTTCAACC
Flanking Amino Acid:
SCACHSLTKTSEWSEALYPL
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
71.8
39.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.1
0.59
0.9
71.1
38.8
Minor 5ss
34.5
-1.8
3
41.9
39
Minor BPS
64.8
0.44
1.5
75.66
34.4

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022176
145916757 - 145966818
50062