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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145950826_145951693_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145950826 - 145951693
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
CTCCTTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TCCTCCTTGATT
Flanking Amino Acid:
AQFESLLSTYGEELAMLEDM
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.8
36.7
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
70.4
0.46
0.9
69.2
36
Minor 5ss
29
-2.4
3.5
35.5
43.2
Minor BPS
76.5
0.92
1.1
82.6
39.5

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022176
145916757 - 145966818
50062
ENSAPLT00000006845
145852047 - 145966818
114772
ENSAPLT00000006841
145852047 - 145966818
114772