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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145951821_145953966_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145951821 - 145953966
Intron Length:
2146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
TCTTTATCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTCTTTATCC
Flanking Amino Acid:
TDMLPVITGNRDGFNVRIPL
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
73.4
32.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.9
0.72
0.8
76.7
30.9
Minor 5ss
27.8
-2.5
2.8
32.2
42.1
Minor BPS
71.3
0.65
1.5
78.99
36.4

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022176
145916757 - 145966818
50062
ENSAPLT00000006845
145852047 - 145966818
114772
ENSAPLT00000006841
145852047 - 145966818
114772