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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145954108_145955462_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145954108 - 145955462
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TCACCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ATATGTTTAACT
Flanking Amino Acid:
GINEQQTLAEKFGDTSLQEV
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
69.9
0.45
1
70.2
33.9
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
68.6
0.66
1.7
83.08
38

Associated Gene:

Gene:
INPP4A
Ensembl Gene ID:
ENSAPLG00000006583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006845
145852047 - 145966818
114772
ENSAPLT00000006841
145852047 - 145966818
114772
ENSAPLT00000022176
145916757 - 145966818
50062