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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145993700_145994027_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145993700 - 145994027
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTCTTTTACCT
Flanking Amino Acid:
YSSIVNSSCSNEMKSKQPSG
Intron Amino Acid Position:
1694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
88.4
0.86
0.7
85.7
28.6
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
66.6
0.6
1.6
84.55
36.3

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143