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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145994209_145994950_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145994209 - 145994950
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTTTTATAG
Flanking Amino Acid:
DSVPLHKAGNSTDNLYKLSL
Intron Amino Acid Position:
1634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.4
0.84
0.6
83.5
24.9
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
51.4
-0
1.7
59.45
42.9

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143