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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145995110_145995258_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145995110 - 145995258
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTATGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
SKSRNLPKTRGPNSKLMESR
Intron Amino Acid Position:
1581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61.5
40
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80
0.68
0.9
77.6
35.5
Minor 5ss
36
-1.6
3.3
47.9
47.6
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143