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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145997015_145998227_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145997015 - 145998227
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
ATGTCTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATGTCTTTTATA
Flanking Amino Acid:
NPDTEPLLKEEPEKQKGKVT
Intron Amino Acid Position:
1497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.4
0.64
0.8
73.2
36.7
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
61.3
0.35
1.6
68.96
38.3

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143