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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145998404_146002281_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145998404 - 146002281
Intron Length:
3878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
CTTATCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTGTCCTTATCT
Flanking Amino Acid:
QPPSPLAKNKGKGKTLQRKT
Intron Amino Acid Position:
1438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
77.8
0.62
0.8
69.5
36.7
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
72.9
0.8
1.6
84.84
41.6

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143