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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146010712_146011071_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146010712 - 146011071
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCATGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAAAAAAGAACA
Flanking Amino Acid:
PSTFVDKMLERFNLSKPTNF
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
91.2
27.5
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
72.4
0.5
1
68.4
41.9
Minor 5ss
42.1
-0.9
2.9
61.3
43
Minor BPS
38.2
-0.9
1.9
46.07
34.9

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143