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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146011463_146013391_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146011463 - 146013391
Intron Length:
1929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AGCTTTGTAACT
Flanking Amino Acid:
WTEIKENSSHRLNALFEVDT
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
81.9
0.72
0.9
73.2
41.4
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
51.9
0.14
2
69.96
41.5

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143