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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146013982_146018693_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146013982 - 146018693
Intron Length:
4712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCTTTTTCATCC
Flanking Amino Acid:
KHVFLPPSFPGKVVHQSLNI
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
88.7
0.87
0.6
88.9
20.4
Minor 5ss
37.8
-1.4
3.1
48.2
47.3
Minor BPS
47.8
-0.1
1.8
57.16
42.4

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143