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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146021631_146021992_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146021631 - 146021992
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
EIPYQAEVLDGYLGFDHAAT
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
84.1
30.2
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
43.3
-0.7
2.8
49.9
46.4
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143