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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146037345_146044719_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146037345 - 146044719
Intron Length:
7375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTTTGACA
Flanking Amino Acid:
FEPPMLDFHEQPVGMPKMEK
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.4
0.73
1
79.9
37.7
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
73.4
0.73
1.1
78.31
31.5

Associated Gene:

Gene:
TMEM131
Ensembl Gene ID:
ENSAPLG00000015123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015859
145987060 - 146083202
96143