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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146122382_146124389_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
146122382 - 146124389
Intron Length:
2008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTAGAG
5'SS Class:
major
3'SS Sequence:
ACCTTTACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCTTTTGTAACC
Flanking Amino Acid:
LSQIGFQHRIDYVTTLGKLV
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
60.6
38.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
72.2
0.5
0.8
66.9
33.4
Minor 5ss
35.9
-1.6
3.3
46.7
48.7
Minor BPS
59.7
0.28
2
72.92
38.9

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455