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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146127179_146128912_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146127179 - 146128912
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TACTTCTGATTT
Flanking Amino Acid:
VTQIAKFNLIRAAQDLMKWQ
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
69.3
43.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.7
0.53
1
63.4
42.5
Minor 5ss
39.2
-1.2
2.9
49.5
46.5
Minor BPS
52.1
0.14
1.7
69.34
42

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455