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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146129070_146133070_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146129070 - 146133070
Intron Length:
4001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTTTATGACA
Flanking Amino Acid:
EALLEAMSETVEAVYYFAVG
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.9
38.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.5
0.66
1
76.7
36.2
Minor 5ss
44.6
-0.6
2.8
57.8
46.4
Minor BPS
58.1
0.25
1.6
70.26
36.1

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455