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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146141632_146145061_F

Intron Information:

Intron Rank:
8
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
146141632 - 146145061
Intron Length:
3430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATCATTT
5'SS Class:
weak_minor
3'SS Sequence:
TTTATAACCAAAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTATAACC
Flanking Amino Acid:
SESEQPASGDDDHPIEKHKY
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.2
66.9
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
62.1
0.27
1.1
61.6
38.1
Minor 5ss
69.8
0.67
2.3
79.2
36.9
Minor BPS
65.2
0.46
1.5
75.69
34.2

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455