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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146146060_146147990_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146146060 - 146147990
Intron Length:
1931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTATATATATAT
Flanking Amino Acid:
MRTALRRVEGRIKWLQQGSR
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.8
0.65
0.9
72.6
37.5
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
45.2
-0.2
2
68.33
41.9

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455