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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146149697_146152846_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146149697 - 146152846
Intron Length:
3150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATGG
5'SS Class:
major
3'SS Sequence:
TTTGGTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTGGTATCT
Flanking Amino Acid:
DAWLWIKGLEVGSSTNTLRA
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
63.4
43.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.7
0.51
0.9
70.6
39.9
Minor 5ss
42.9
-0.8
2.9
56.6
47.5
Minor BPS
46.2
-0.2
2.7
78.81
43.9

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455