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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146152946_146156172_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146152946 - 146156172
Intron Length:
3227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTCTCTTTGATA
Flanking Amino Acid:
YLLTDGRPDQSEDIHLLKQE
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
77.6
0.62
0.9
76
32.7
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
74
0.75
1.1
77.56
33.5

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043896
146120392 - 146189047
68656