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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146156301_146157780_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146156301 - 146157780
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CACTTACAAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTCACTTACAA
Flanking Amino Acid:
CYKEENDSENSNQKQTHTVS
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
61.3
0.25
1
56.3
37.8
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
49.1
-0
1.9
64.42
41

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455